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Old 04-28-2010, 07:47 PM
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olsen olsen is offline
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olsen olsen is offline
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Join Date: Aug 2006
Posts: 1,860
15 yr Member
Default 23andme "raw data" mining

thought I would make this a topic on its own:

For those who have obtained the partial genomic profiling from 23andme, one is able to "browse raw data" and find many more SNPs than in the reported profile which 23andme gives. This is how to obtain that information:

From 23andme site
"..If you have the Complete Edition, you can browse your raw data by clicking on Account in the upper right-hand corner of any page and selecting Browse Raw Data.

The DNA that makes up your genome is organized into 22 pairs of chromosomes, a pair of sex chromosomes (two X, or an X and a Y), and your mitochondrial DNA. The main view of Browse Raw Data shows each chromosome and tells you how many DNA bases and genes are in each. It also tells you the number of SNPs for which we have data."

Click on any of the chromosomes and up pops your SNPs.



Then input your variants into :

http://www.snpedia.com

http://www.snpedia.com/index.php/Promethease

http://www.pharmgkb.org/search/annot...1b1/variant.js

if you have LOTS of time:
http://www.openhelix.com/downloads/g...ps_home.shtmlp
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Conductor71 (04-29-2010), girija (04-29-2010), GregD (04-29-2010), vlhperry (04-28-2010)